PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30170.m014220
Common NameLOC8288898, RCOM_1593850
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 502aa    MW: 52601.8 Da    PI: 8.4828
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30170.m014220genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-056890123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C++C+k F r  nL+ H r H
  30170.m014220 68 FVCEICNKGFQRDQNLQLHRRGH 90
                   89*******************88 PP

2zf-C2H215.74.1e-05144166123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC+ C+k +  +s+ k H++t+
  30170.m014220 144 WKCERCSKKYAVQSDWKAHMKTC 166
                    58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.22E-76790No hitNo description
Gene3DG3DSA:3.30.160.601.7E-56790IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9496890IPR007087Zinc finger, C2H2
SMARTSM003550.0176890IPR015880Zinc finger, C2H2-like
PfamPF121718.0E-56890IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SMARTSM00355250109139IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.3E-5132165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.22E-7139165No hitNo description
SMARTSM0035577144164IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MEADNSSQMT LSTNSGGEGT SVVSSFSNQA VPLSLPPPKK KRNLPGMPDP DAEVIALSPK  60
TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRT SKEPIKRVYV CPEASCVHHN  120
PARALGDLTG IKKHFCRKHG EKKWKCERCS KKYAVQSDWK AHMKTCGTRE YKCDCGTLFS  180
RRDSFITHRA FCDALAEESA RAQTLTFMDK EGSNNTNMKS VVAVASPPPP PLTPSTTVVS  240
PGVSAQSSEL AENAVNISAA TACLTAPDTS TNSTSTTTSN VFASVFASST AAAISQEGPS  300
SSPSFSNLLS AFTHSDCAAT MSTPRAVEPP SLSLSSSLYL SSNASSLFPD QDQHRHYTQS  360
SLPAMSATAL LQKAAQMGAS SSNASFLRGL GLPVTSSTGQ HNSGNQWDVK PDTSALAAAG  420
LGLGVPSGDI MMGSSALFGN KPTTLDLLGL GMGASSALLN SYGGSFNVGA AAASASPYGG  480
GGGGSSEETW DGAAEKKPNG YN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002510356.10.0PREDICTED: protein indeterminate-domain 2
SwissprotQ9LVQ71e-137IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLB9R7R30.0B9R7R3_RICCO; Nucleic acid binding protein, putative
STRINGPOPTR_0002s26430.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-115indeterminate(ID)-domain 2